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Curation
Gene
Target gene
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Oncogene
Tumor suppressor gene
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Oncogene
Tumor suppressor gene
MicroRNA
RNA-interaction
ncRNA
Host2Host
Host2Virus
Virus2Host
• miRNA
Host2Host
Host2Virus
Virus2Host
• lncRNA
Host2Host
Host2Virus
Virus2Host
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VISDB
Viral Integration Site DataBase
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My curation
TVIS10005437
Basic Information
VIS ID
TVIS10005437
Fusion name
HBV-PUM1 integration
State
Not Validated
Fusion type
Deatction Method
PCR and Ultra-deep sequencing
Curated Way
Curated
Sample
Tumor
Disease
Hepatocellular carcinoma
Quality evaluation
Normal
Reported year
2018
Pubmed ID
29861854
Virus Sequence
Virus name
Subtype
Reference genome
AP011098
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Strand
Gene
Region type
Start
End
Orient
Integrated Sequence
AGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACTTTTTCACCTCTGC| |CTAATCATCTCATGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATTGACCCGTATAAAGAATTTGGAGCTT
Host Sequence
Chromosome
Cytoband
Reference genome
GRCh37/hg19
Edit
Start
End
Orient
Location type
Target gene
PUM1
Target sequence
Junction sequence
A
iHostLeftEnd
iHostRightBegin
iVirusLeft
iVirusRight
Junction sequence preview
A
* Color:
Human Sequence
/
Virus Sequence
/
Overlapped sequence
/
Unknown sequence
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