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Curation
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Virus2Host
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VISDB
Viral Integration Site DataBase
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My curation
TVIS10005530
Basic Information
VIS ID
TVIS10005530
Fusion name
HBV-SLCO6A1 integration
State
Not Validated
Fusion type
Deatction Method
PCR and Ultra-deep sequencing
Curated Way
Curated
Sample
Nontumor
Disease
Hepatocellular carcinoma
Quality evaluation
Normal
Reported year
2018
Pubmed ID
29861854
Virus Sequence
Virus name
Subtype
Reference genome
AP011098
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Strand
Gene
Region type
Start
End
Orient
Integrated Sequence
GACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACTTTTTCA| |CCTCTGCCTAATCATCTCATGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATTGACCCGTATAAAGAATTT
Host Sequence
Chromosome
Cytoband
Reference genome
GRCh37/hg19
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Start
End
Orient
Location type
Fragile sites / regions
FRA5F
Target gene
SLCO6A1
Target sequence
Junction sequence
TG
iHostLeftEnd
iHostRightBegin
iVirusLeft
iVirusRight
Junction sequence preview
TG
* Color:
Human Sequence
/
Virus Sequence
/
Overlapped sequence
/
Unknown sequence
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