VISDB - VIS Curation

Basic Information

VIS ID

TVIS10006366

Fusion name

HBV-chr10 integration

State

Validated

Fusion type

Deatction Method

invPCR +Sequencing

Curated Way

Curated

Sample

Tumor

Disease

Hepatocellular carcinoma

Quality evaluation

Perfect

Reported year

2016

Pubmed ID

27453547

Virus Sequence

Virus name

Subtype

Reference genome

V01460.1 Edit

Strand

Gene

Region type

Start

End

Orient

Integrated Sequence

Host Sequence

Chromosome

Cytoband

Reference genome

GRCh38 Edit

Start

End

Orient

Location type

Fragile sites / regions

FRA10D ; FRA10A ; FRA10B

Nearby gene

AFAP1L2(-19720) ; ABLIM1(+6611) ;

Nearest cancer gene

AFAP1L2(TSG, -19720) ;

Target sequence

Junction sequence

iHostLeftEnd

iHostRightBegin

iVirusLeft

iVirusRight

Junction sequence preview

TGAGCGTAAAGCTTAGTTGCTGGAGAACACACCAATT

* Color: Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence

Please provide your email address for further verification:

Edit link