VISDB - VIS Curation

Basic Information

VIS ID

TVIS10006451

Fusion name

HBV-LINC02054 integration

State

Validated

Fusion type

Deatction Method

invPCR +Sequencing

Curated Way

Curated

Sample

Tumor

Disease

Hepatocellular carcinoma

Quality evaluation

Perfect

Reported year

2016

Pubmed ID

27453547

Virus Sequence

Virus name

Subtype

Reference genome

V01460.1 Edit

Strand

Gene

Region type

Start

End

Orient

Integrated Sequence

Host Sequence

Chromosome

Cytoband

Reference genome

GRCh38 Edit

Start

End

Orient

Location type

Fragile sites / regions

FRA3C

Target gene

LINC02054

Nearby gene

CHRD(-26908) ; EPHB3(+145055) ;

Target sequence

Junction sequence

iHostLeftEnd

iHostRightBegin

iVirusLeft

iVirusRight

Junction sequence preview

CAGGTGCGCCATAACTTGCTGGTGCGCAGACCAATT

* Color: Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence

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