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Curation
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Oncogene
Tumor suppressor gene
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Virus2Host
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VISDB
Viral Integration Site DataBase
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My curation
TVIS10006534
Basic Information
VIS ID
TVIS10006534
Fusion name
HBV-OLFM1 integration
State
Validated
Fusion type
Deatction Method
invPCR +Sequencing
Curated Way
Curated
Sample
Tumor
Disease
Hepatocellular carcinoma
Quality evaluation
Perfect
Reported year
2016
Pubmed ID
27453547
Virus Sequence
Virus name
Subtype
Reference genome
V01460.1
Edit
Strand
Gene
Region type
Start
End
Orient
Integrated Sequence
CGTCCGCAGGATTCAGCGCCGACGGGACGTAAACAAAGGACGTCCCGCGCAGGATCCAGTTGGCAGCACAGCCTAGCAGCCATGGAAACGATGTATATTT| |GCGGGATAGGACAACAGAGTTATCAGTCCCGATAATGTTTGCTCCAGACCTGCTGCGAGCAAAACAAGCGGCTAGGAGTTCCGCAGTATGGATCGGCAGA
Host Sequence
Chromosome
Cytoband
Reference genome
GRCh38
Edit
Start
End
Orient
Location type
Target gene
OLFM1
Target sequence
Junction sequence
CAGCACCATGNAACTTTTTCTAAGGATTGGGTGCCAGGCA
iHostLeftEnd
iHostRightBegin
iVirusLeft
iVirusRight
Junction sequence preview
CAGCACCATGNAACTTTTTCTAAGGATTGGGTGCCAGGCA
* Color:
Human Sequence
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Virus Sequence
/
Overlapped sequence
/
Unknown sequence
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