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Curation
Gene
Target gene
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Oncogene
Tumor suppressor gene
Nearby gene
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Oncogene
Tumor suppressor gene
MicroRNA
RNA-interaction
ncRNA
Host2Host
Host2Virus
Virus2Host
• miRNA
Host2Host
Host2Virus
Virus2Host
• lncRNA
Host2Host
Host2Virus
Virus2Host
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VISDB
Viral Integration Site DataBase
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My curation
TVIS10006950
Basic Information
VIS ID
TVIS10006950
Fusion name
HBV-WASH8P integration
State
Validated
Fusion type
Deatction Method
Alu PCR and sequencing
Curated Way
Curated
Sample
Tumor
Disease
Hepatocellular carcinoma
Quality evaluation
Normal
Reported year
2015
Pubmed ID
25627239
Virus Sequence
Virus name
Subtype
Reference genome
JQ688404
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Strand
Gene
Region type
Start
End
Orient
Integrated Sequence
TCCTCTACTTCCAGGAACATCAACTACCAGCACGGGACCATGCAAGACCTGCACGATTCCTGCTCAAGGAACCTCTATGTTTCCCTCTTGTTGCTGTACA| |AAACCTTCGGACGGAAACTGCACTTGTATTCCCATCCCATCATCCTGGGCTTTCGCAAGATTCCTATGGGAGTGGGCCTCAGTCCGTTTCTCCTGGCTCA
Host Sequence
Chromosome
Cytoband
Reference genome
GRCh37/hg19
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Start
End
Orient
Location type
Target gene
WASH8P
Target sequence
Junction sequence
iHostLeftEnd
iHostRightBegin
iVirusLeft
iVirusRight
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