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VISDB
Viral Integration Site DataBase
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My curation
TVIS10014880
Basic Information
VIS ID
TVIS10014880
Fusion name
HBV-CHIC2 integration
State
Validated
Fusion type
Deatction Method
PCR and Sanger sequencing
Curated Way
Curated
Sample
Cell line
Disease
Hepatocellular carcinoma
Quality evaluation
Perfect
Reported year
2014
Pubmed ID
24582836
Virus Sequence
Virus name
Subtype
Reference genome
NC_003977.1
Edit
Strand
Gene
Region type
Start
End
Orient
Integrated Sequence
CCGTTTGTCCTCTACTTCCAGGAACATCAACTACCAGCACGGGACCATGCAGAACCTGCACGATTCCTGCTCAAGGAACCTCTATGTTTCCCTCTTGTTGCTGTACAAAACCTTCGGACGGAAACTGCACTTGTATTCCCATCCCATCATCCTGGGCTTTCGCAAGATTCCTATGGGAGTGGGCCTCAGTCCGTTTCTCCTGGCTCAGTTTACTAGTGCCATTTGTTCAGTGGTTCGTAGGGCTT
Host Sequence
Chromosome
Cytoband
Reference genome
GRCh37.p10
Edit
Start
End
Orient
Location type
Fragile sites / regions
FRA4B
Target gene
CHIC2
Target sequence
AGAGACATAGCAGGCATTGAAACAATGGAAATGCCCACATAGCAGAAGGGAGTGAGGGGATCCAAACTACAAGAGCGACAAAATCAACTGTGGATCCAGAGACGAAAAAATGTTCTGTAGTGCAAAGGTAATCTGGTGAGAATGATGAAAAAAAAAGAACCATTTTTAGAAAAAAGGAATATTAGAAATATTGAAGTAAATATCATAAGTCATTCTATTACAAAGGCATTAACTCCTTCCTATCAATAGAATGTA
Junction sequence
TTCCTGCTCAAGGAACCTCTATGTTTCCCTCTTGTTGCTGTACAAAACCTTCGGACGGAAACTGCACTTGTATTCCCATCCCATCATCCTGGGCTTTCGCAAGATTCCTATGGGAGTGGGCCTCAGTCCGTTTCTCCTGGCTCAGTTTACTAGTGCCATTTGTTCAGTGGTTCGTAGGGCTGAGAGACATAGCAGGCATTGAAACAATGGAAATGCCCACATA
iHostLeftEnd
iHostRightBegin
iVirusLeft
iVirusRight
Junction sequence preview
TTCCTGCTCAAGGAACCTCTATGTTTCCCTCTTGTTGCTGTACAAAACCTTCGGACGGAAACTGCACTTGTATTCCCATCCCATCATCCTGGGCTTTCGCAAGATTCCTATGGGAGTGGGCCTCAGTCCGTTTCTCCTGGCTCAGTTTACTAGTGCCATTTGTTCAGTGGTTCGTAGGGCTGAGAGACATAGCAGGCATTGAAACAATGGAAATGCCCACATA
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Human Sequence
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Virus Sequence
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Overlapped sequence
/
Unknown sequence
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