VISDB - VIS Curation

Basic Information

VIS ID

TVIS10014884

Fusion name

HBV-RALGPS1 integration

State

Validated

Fusion type

Deatction Method

PCR and Sanger sequencing

Curated Way

Curated

Sample

Cell line

Disease

Hepatocellular carcinoma

Quality evaluation

Perfect

Reported year

2014

Pubmed ID

24582836

Virus Sequence

Virus name

Subtype

Reference genome

NC_003977.1 Edit

Strand

Gene

Region type

Start

End

Orient

Integrated Sequence

Host Sequence

Chromosome

Cytoband

Reference genome

GRCh37.p10 Edit

Start

End

Orient

Location type

Target gene

RALGPS1

Target sequence

Junction sequence

iHostLeftEnd

iHostRightBegin

iVirusLeft

iVirusRight

Junction sequence preview

TTTAGGCAAAAACAGCAAATGACATATACAGGAAATGATTAGATTACCATCAGTCTTTTTTGACAGAAACATGTTTTTTCCAAAAGGAAATGGAACTACATAATTAAGGAAAGAAAGAAAAAGTGGGGCAATGGGAGCTTCTTCTACCTAGCTCTTGAGTCCGTTTGCCACAAACCCTCCTATTCCTTGACAGCTTCCTCACTCCAAAAGTGTAGGATGCTGCCTAATCATCTCATGTTCATGTCCTACTATTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATTGAC

* Color: Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence

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