VISDB - VIS Curation

Basic Information

VIS ID

TVIS10015422

Fusion name

HBV-chr1 integration

State

Validated

Fusion type

Deatction Method

PCR and Sanger sequencing

Curated Way

Curated

Sample

Tumor

Disease

Hepatocellular carcinoma

Quality evaluation

Perfect

Reported year

2013

Pubmed ID

23867110

Virus Sequence

Virus name

Subtype

Reference genome

AB014381.1 Edit

Strand

Gene

Region type

Start

End

Orient

Integrated Sequence

Host Sequence

Chromosome

Cytoband

Reference genome

GRCh37/hg19 Edit

Start

End

Orient

Location type

Fragile sites / regions

FRA1A

Target sequence

Junction sequence

iHostLeftEnd

iHostRightBegin

iVirusLeft

iVirusRight

Junction sequence preview

GAGGCTGTAGGCATAAATTGGTCTGTTCACCGCAGGCGTCCTTTCCAAGGACCTACAGGATCACCATGGGCCTAGCAGATAAACCAGGATGATGTCCATATTTTAAAGTTCATAGCCTTAATTCTGTCTGCAAACTCCCTATTGCCACGTAACAGCATATATACAGGTTTCTGGGATTAGAGTGTGGGCAACTTTAGT

* Color: Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence

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