VISDB - VIS Curation

Basic Information

VIS ID

TVIS10015757

Fusion name

HBV-SMAD5 integration

State

Not Validated

Fusion type

Deatction Method

MAPS

Curated Way

Curated

Sample

Tumor

Disease

Hepatocellular carcinoma

Quality evaluation

Perfect

Reported year

2012

Pubmed ID

23236287

Virus Sequence

Virus name

Subtype

Reference genome

AY800389.1;AY800390.1;AY800391.1;AY800392.1Edit

Strand

Gene

Region type

Start

End

Orient

Integrated Sequence

Host Sequence

Chromosome

Cytoband

Reference genome

GRCh37/hg19 Edit

Start

End

Orient

Location type

Fragile sites / regions

FRA5C

Target gene

SMAD5

Target sequence

Junction sequence

iHostLeftEnd

iHostRightBegin

iVirusLeft

iVirusRight

Junction sequence preview

GAATGTGAACTACCTATAAAGAAGGCTATGTGCAGAGGTGAAGCGAAGTCGAAGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTACA

* Color: Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence

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