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Curation
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Oncogene
Tumor suppressor gene
MicroRNA
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ncRNA
Host2Host
Host2Virus
Virus2Host
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Host2Host
Host2Virus
Virus2Host
• lncRNA
Host2Host
Host2Virus
Virus2Host
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VISDB
Viral Integration Site DataBase
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My curation
TVIS10017185
Basic Information
VIS ID
TVIS10017185
Fusion name
HBV-NTRK3 integration
State
Not Validated
Fusion type
Deatction Method
Capture-NGS platform
Curated Way
Curated
Sample
Tumor
Disease
Hepatocellular carcinoma
Quality evaluation
Good
Reported year
2019
Pubmed ID
30070724
Virus Sequence
Virus name
Subtype
Reference genome
NC_003977
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Strand
Gene
Region type
Start
End
Orient
Integrated Sequence
CGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGA
Host Sequence
Chromosome
Cytoband
Reference genome
GRCh37/hg19
Edit
Start
End
Orient
Location type
Target gene
NTRK3
Nearest cancer gene
NTRK3
(TSG, No orient, 0)
Target sequence
TGAGATGTTTTTCAACCCCATTGCAGGTAGGCATGGAATGGAGCAGGGAGCCCCGAGCAATACCCAACTATGCCAATCGTACCATCAGACATGTTGCTGATAGCCCTGGAATCCATAGATCT
Junction sequence
iHostLeftEnd
iHostRightBegin
iVirusLeft
iVirusRight
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