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Curation
Gene
Target gene
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Oncogene
Tumor suppressor gene
Nearby gene
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Oncogene
Tumor suppressor gene
MicroRNA
RNA-interaction
ncRNA
Host2Host
Host2Virus
Virus2Host
• miRNA
Host2Host
Host2Virus
Virus2Host
• lncRNA
Host2Host
Host2Virus
Virus2Host
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VISDB
Viral Integration Site DataBase
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My curation
TVIS10017783
Basic Information
VIS ID
TVIS10017783
Fusion name
HBV-APOA1 integration
State
Not Validated
Fusion type
Deatction Method
TS
Curated Way
Curated
Sample
Nontumor
Disease
Hepatocellular carcinoma
Quality evaluation
Normal
Reported year
2016
Pubmed ID
26867494
Virus Sequence
Virus name
Subtype
Reference genome
DQ089769.1
Edit
Strand
Gene
Region type
Start
End
Orient
Integrated Sequence
GAACGCCCGACAGGTCTTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTGTA| |TTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGATTAAAGGTCTTTGTACTGGGAGGCTGTAGGCATAAATTGGTCTGTTCACCAGCACCATGCAACT
Host Sequence
Chromosome
Cytoband
Reference genome
GRCh37/hg19
Edit
Start
End
Orient
Location type
Fragile sites / regions
FRA11G
;
FRA11B
Target gene
APOA1
Target sequence
Junction sequence
iHostLeftEnd
iHostRightBegin
iVirusLeft
iVirusRight
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