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Curation
Gene
Target gene
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Oncogene
Tumor suppressor gene
Nearby gene
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Oncogene
Tumor suppressor gene
MicroRNA
RNA-interaction
ncRNA
Host2Host
Host2Virus
Virus2Host
• miRNA
Host2Host
Host2Virus
Virus2Host
• lncRNA
Host2Host
Host2Virus
Virus2Host
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VISDB
Viral Integration Site DataBase
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My curation
TVIS10019975
Basic Information
VIS ID
TVIS10019975
Fusion name
HBV-SUMF1 integration
State
Not Validated
Fusion type
Deatction Method
RNA-Seq
Curated Way
Curated
Sample
Nontumor
Disease
Hepatocellular carcinoma
Quality evaluation
Good
Reported year
2013
Pubmed ID
24085110
Virus Sequence
Virus name
Subtype
Reference genome
NC_003977.1
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Strand
Gene
Region type
Start
End
Orient
Integrated Sequence
Host Sequence
Chromosome
Cytoband
Reference genome
GRCh37/hg19
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Start
End
Orient
Location type
Target gene
SUMF1
Target sequence
CTGGAATTCACTTATTGACAATAAGAACCATGCTCAAAGTAATGCTGACAAAGGGATCTTTTCCACAAAGGAAACCTGAGGCTTTTCTGCATTCAGGCCTTTACTCTGAATCTACGGATGCATTGATATTGGTATCATTACTATCATCATTATTTCCTTCA
Junction sequence
iHostLeftEnd
iHostRightBegin
iVirusLeft
iVirusRight
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