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Curation
Gene
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Oncogene
Tumor suppressor gene
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Oncogene
Tumor suppressor gene
MicroRNA
RNA-interaction
ncRNA
Host2Host
Host2Virus
Virus2Host
• miRNA
Host2Host
Host2Virus
Virus2Host
• lncRNA
Host2Host
Host2Virus
Virus2Host
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VISDB
Viral Integration Site DataBase
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My curation
TVIS20000019
Basic Information
VIS ID
TVIS20000019
Fusion name
HPV-chr21:q22.3 integration
State
Validated
Fusion type
Deatction Method
PCR Ion Torrent Sequencing
Curated Way
Curated
Sample
Tumor
Disease
Cervical carcinoma
Quality evaluation
Normal
Reported year
2016
Pubmed ID
26660085
Virus Sequence
Virus name
Subtype
Reference genome
NC_001526.4
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Strand
Gene
Region type
Start
End
Orient
Integrated Sequence
Host Sequence
Chromosome
Cytoband
Reference genome
NCBI36/hg18
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Start
End
Orient
Location type
Target gene
PRDM15
;
RIPK4
Nearest cancer gene
PRDM15
(OG, No orient, 0)
Target sequence
tgcttattgcggcactattcacaatagcaaagacttggaaccaacccaaatgtccatcaatgatagactggattaagaaaatgtggcacatatacaccatggaatactatgcagtcataaaaaaggatgagttcatgtccgttgtagggacatggatgaagctggaaaccatcattctcagcaaactatcaca
Junction sequence
iHostLeftEnd
iHostRightBegin
iVirusLeft
iVirusRight
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