VISDB - VIS Curation

Basic Information

VIS ID

TVIS20003724

Fusion name

HPV-POU5F1B integration

State

Validated

Fusion type

Deatction Method

PCR and Sanger sequencing

Curated Way

Curated

Sample

Cell line

Disease

Cervical carcinoma

Quality evaluation

Perfect

Reported year

2016

Pubmed ID

26735580

Virus Sequence

Virus name

Subtype

Reference genome

AY262282.1 Edit

Strand

Gene

Region type

Start

End

Orient

Integrated Sequence

Host Sequence

Chromosome

Cytoband

Reference genome

GRCh37/hg19 Edit

Start

End

Orient

Location type

Fragile sites / regions

FRA8C ; FRA8E

Target gene

POU5F1B

Target sequence

Junction sequence

iHostLeftEnd

iHostRightBegin

iVirusLeft

iVirusRight

Junction sequence preview

TGCTAATCTTCTATGAGCTTCGTCAAGTCATTTAAGCTTGGTACCAGTCAGTTTCCTCATCTGAAAACTGAGAAAAGTTGTTTCAAATTGTCTAAGTCCATTCCAGCACATGGCCACCTTAGTATCTGTTAACGGTTCCAACCAAAAATGACTAGTGGAA

* Color: Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence

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