VISDB - VIS Curation

Basic Information

VIS ID

TVIS20003727

Fusion name

HPV-chr13 integration

State

Validated

Fusion type

Deatction Method

PCR and Sanger sequencing

Curated Way

Curated

Sample

Cell line

Disease

Cervical carcinoma

Quality evaluation

Perfect

Reported year

2016

Pubmed ID

26735580

Virus Sequence

Virus name

Subtype

Reference genome

NC_001526.2 Edit

Strand

Gene

Region type

Start

End

Orient

Integrated Sequence

Host Sequence

Chromosome

Cytoband

Reference genome

GRCh37/hg19 Edit

Start

End

Orient

Location type

Fragile sites / regions

FRA13B

Target gene

KLF12 ; KLF5

Nearest cancer gene

KLF5(OG, No orient, 0)

Target sequence

Junction sequence

iHostLeftEnd

iHostRightBegin

iVirusLeft

iVirusRight

Junction sequence preview

AGGCGACGGCTTTGGTATGGGTCGCGGCGGAGTGGTTGGCCAAGTGCTGCCTAATACAAAAATTAGCTGGGTGTAGTGGCACACGCCTGTAATCCCAGCTACTCGGGAGGCTGGGGAAGGAGAATCACTTGAACCTGGGAGG

* Color: Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence

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