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Curation
Gene
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Oncogene
Tumor suppressor gene
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Oncogene
Tumor suppressor gene
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ncRNA
Host2Host
Host2Virus
Virus2Host
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Host2Host
Host2Virus
Virus2Host
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Host2Host
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VISDB
Viral Integration Site DataBase
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My curation
TVIS20003738
Basic Information
VIS ID
TVIS20003738
Fusion name
HPV-GLI2 integration
State
Validated
Fusion type
Deatction Method
PCR and Sanger sequencing
Curated Way
Curated
Sample
Tumor
Disease
Not given
Quality evaluation
Perfect
Reported year
2015
Pubmed ID
25581428
Virus Sequence
Virus name
Subtype
Reference genome
NC_001526.2
Edit
Strand
Gene
Region type
Start
End
Orient
Integrated Sequence
AGACTGAAACACCATGTAGTCAGTATAGTGGTGGAAGTG
Host Sequence
Chromosome
Cytoband
Reference genome
GRCh37/hg19
Edit
Start
End
Orient
Location type
Fragile sites / regions
FRA2S
Target gene
GLI2
Nearest cancer gene
GLI2
(OG, No orient, 0)
Target sequence
Junction sequence
CTCCCACCTACACAGGGAAGGACGGCACTGAGGGCCTCCCTTCTCAGTGGGGGCTCTGCCTGTAGCCATGAGACTGAAACGCCATGTAGTCAGTATAGTGGTGGAAGGGG
iHostLeftEnd
iHostRightBegin
iVirusLeft
iVirusRight
Junction sequence preview
CTCCCACCTACACAGGGAAGGACGGCACTGAGGGCCTCCCTTCTCAGTGGGGGCTCTGCCTGTAGCCATGAGACTGAAACGCCATGTAGTCAGTATAGTGGTGGAAGGGG
* Color:
Human Sequence
/
Virus Sequence
/
Overlapped sequence
/
Unknown sequence
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