VISDB - VIS Curation

Basic Information

VIS ID

TVIS20003778

Fusion name

HPV-CSDE1 integration

State

Validated

Fusion type

Deatction Method

PCR and Sanger sequencing

Curated Way

Curated

Sample

Tumor

Disease

Not given

Quality evaluation

Perfect

Reported year

2015

Pubmed ID

25581428

Virus Sequence

Virus name

Subtype

Reference genome

NC_001526.2 Edit

Strand

Gene

Region type

Start

End

Orient

Integrated Sequence

Host Sequence

Chromosome

Cytoband

Reference genome

GRCh37/hg19 Edit

Start

End

Orient

Location type

Target gene

CSDE1

Target sequence

Junction sequence

iHostLeftEnd

iHostRightBegin

iVirusLeft

iVirusRight

Junction sequence preview

AGAAACGCAAAAAGCACTGGGCTGTAGACATAAAATTTATGTATTTTACTTATGTAAATTGCTCAATAAATGTTTAATGATAAAGCATTACAAGCAATTGAACTGC

* Color: Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence

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