VISDB - VIS Curation

Basic Information

VIS ID

TVIS20003795

Fusion name

HPV-chr6 integration

State

Validated

Fusion type

Deatction Method

PCR and Sanger sequencing

Curated Way

Curated

Sample

Tumor

Disease

Squamous-cell carcinoma

Quality evaluation

Perfect

Reported year

2015

Pubmed ID

25581428

Virus Sequence

Virus name

Subtype

Reference genome

NC_001526.2 Edit

Strand

Gene

Region type

Start

End

Orient

Integrated Sequence

Host Sequence

Chromosome

Cytoband

Reference genome

GRCh37/hg19 Edit

Start

End

Orient

Location type

Target gene

PERP ; TNFAIP3

Nearest cancer gene

TNFAIP3(TSG, No orient, 0)

Target sequence

Junction sequence

iHostLeftEnd

iHostRightBegin

iVirusLeft

iVirusRight

Junction sequence preview

AGAGAGAAAGGGAGAAGAGAGAGGAAGGAAGGAAGGAAGGAAAGAGGATTGGAGCACTGTCCACTGAGTCTCTGTGCAGCAACTTAGTGGTGTGGCATCGTCGACCTGCA

* Color: Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence

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