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Curation
Gene
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Oncogene
Tumor suppressor gene
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Oncogene
Tumor suppressor gene
MicroRNA
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ncRNA
Host2Host
Host2Virus
Virus2Host
• miRNA
Host2Host
Host2Virus
Virus2Host
• lncRNA
Host2Host
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VISDB
Viral Integration Site DataBase
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My curation
TVIS20003819
Basic Information
VIS ID
TVIS20003819
Fusion name
HPV-CDH13 integration
State
Validated
Fusion type
Deatction Method
PCR and Sanger sequencing
Curated Way
Curated
Sample
Nontumor
Disease
Cervical carcinoma
Quality evaluation
Perfect
Reported year
2016
Pubmed ID
27759101
Virus Sequence
Virus name
Subtype
Reference genome
NC_001526.2
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Strand
Gene
Region type
Start
End
Orient
Integrated Sequence
TACAGGTTC TAAAACGAAAGTATTTGGTAGTCCACTTAGTGATATTAGTGGATGTGTAGACAATAATATTAGTCCTAGA TTAAAAGCTATATGTATAG| |AAAAACAAAGTAGAGCTGCAAAAAGGAGATTATTTGAAAGCGAAGACAGCG GGTATGGCAATACTGAAGTGGAAACTCAGCAGATGTTACAGGTAGAAG
Host Sequence
Chromosome
Cytoband
Reference genome
GRCh37/hg19
Edit
Start
End
Orient
Location type
Target gene
CDH13
Nearby gene
CDH13
Nearest cancer gene
CDH13
(TSG, No orient, 0)
Target sequence
Junction sequence
GCAACCGGATATGCCCACTGAGGTGGAATCTGAGCTCTACTTTGTTTTTCTATACATATAGCTTTTAATCTAGG
iHostLeftEnd
iHostRightBegin
iVirusLeft
iVirusRight
Junction sequence preview
GCAACCGGATATGCCCACTGAGGTGGAATCTGAGCTCTACTTTGTTTTTCTATACATATAGCTTTTAATCTAGG
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Human Sequence
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Virus Sequence
/
Overlapped sequence
/
Unknown sequence
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