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Curation
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Tumor suppressor gene
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Virus2Host
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VISDB
Viral Integration Site DataBase
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My curation
TVIS20003824
Basic Information
VIS ID
TVIS20003824
Fusion name
HPV-chr5:q11.2 integration
State
Validated
Fusion type
Deatction Method
PCR and Sanger sequencing
Curated Way
Curated
Sample
Tumor
Disease
Cervical intraepithelial neoplasia
Quality evaluation
Perfect
Reported year
2016
Pubmed ID
27759101
Virus Sequence
Virus name
Subtype
Reference genome
NC_001526.2
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Strand
Gene
Region type
Start
End
Orient
Integrated Sequence
GGTG GCCTTATTTACATAATAGATTGGTGGTGTTTACATTTCCTAATGAGTTTCCATTTGACGAAAACGGAAAT CCAGTGTATGAGCTTAATGATAAG| |AACTGGAAATCCTTTTTCTCAAGGACGTGGTCCAGATTAAGTTTGC ACGAGGACGAGGACAAGGAAAACGATGGAGACTCTTTGCCAACGTTTAAATGT
Host Sequence
Chromosome
Cytoband
Reference genome
GRCh37/hg19
Edit
Start
End
Orient
Location type
Fragile sites / regions
FRA5H
Target sequence
Junction sequence
AGCTAGAGACTGTTCATGTCAGAGATCAGGAATCTGGACCACGTCCTTGAGAAAAAGG
iHostLeftEnd
iHostRightBegin
iVirusLeft
iVirusRight
Junction sequence preview
AGCTAGAGACTGTTCATGTCAGAGATCAGGAATCTGGACCACGTCCTTGAGAAAAAGG
* Color:
Human Sequence
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Virus Sequence
/
Overlapped sequence
/
Unknown sequence
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