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Curation
Gene
Target gene
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Oncogene
Tumor suppressor gene
Nearby gene
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Oncogene
Tumor suppressor gene
MicroRNA
RNA-interaction
ncRNA
Host2Host
Host2Virus
Virus2Host
• miRNA
Host2Host
Host2Virus
Virus2Host
• lncRNA
Host2Host
Host2Virus
Virus2Host
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VISDB
Viral Integration Site DataBase
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My curation
TVIS20003825
Basic Information
VIS ID
TVIS20003825
Fusion name
HPV-PPP6R3 integration
State
Validated
Fusion type
Deatction Method
PCR and Sanger sequencing
Curated Way
Curated
Sample
Tumor
Disease
Cervical intraepithelial neoplasia
Quality evaluation
Perfect
Reported year
2016
Pubmed ID
27759101
Virus Sequence
Virus name
Subtype
Reference genome
NC_001526.2
Edit
Strand
Gene
Region type
Start
End
Orient
Integrated Sequence
AGTATAGTGGTGGAAGTGGGGGTGGTTGCAGTCAGTACAGTAGTGGAAGTGGGGGAGAGGGT GTTAGTGAAAGACACACTATATGCCAAACACCACTTA| |CAAATATTTTAAATGTACTAAAAACTAGTAATG CAAAGGCAGCAATGTTAGCAAAATTTAAAGAGTTATACGGGGTGAGTTTTTCAGAATTAGTAAGAC
Host Sequence
Chromosome
Cytoband
Reference genome
GRCh37/hg19
Edit
Start
End
Orient
Location type
Fragile sites / regions
FRA11H
;
FRA11A
Target gene
PPP6R3
Nearby gene
PPP6R3
Target sequence
Junction sequence
TTGGAAATTCTCTTTGTGATTTTGAAATGCTAGTACATTTAAAATATTTGTAAGTGGTGTTT
iHostLeftEnd
iHostRightBegin
iVirusLeft
iVirusRight
Junction sequence preview
TTGGAAATTCTCTTTGTGATTTTGAAATGCTAGTACATTTAAAATATTTGTAAGTGGTGTTT
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Human Sequence
/
Virus Sequence
/
Overlapped sequence
/
Unknown sequence
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