VISDB - VIS Curation

Basic Information

VIS ID

TVIS20003826

Fusion name

HPV-LOC105373815 integration

State

Validated

Fusion type

Deatction Method

PCR and Sanger sequencing

Curated Way

Curated

Sample

Tumor

Disease

Cervical intraepithelial neoplasia

Quality evaluation

Perfect

Reported year

2016

Pubmed ID

27759101

Virus Sequence

Virus name

Subtype

Reference genome

M12732.1 Edit

Strand

Gene

Region type

Start

End

Orient

Integrated Sequence

Host Sequence

Chromosome

Cytoband

Reference genome

GRCh37/hg19 Edit

Start

End

Orient

Location type

Target gene

LOC105373815

Target sequence

Junction sequence

iHostLeftEnd

iHostRightBegin

iVirusLeft

iVirusRight

Junction sequence preview

TTTTGAAATGTTAATCCAAGAGTCATACTCTTGTTTTTTAAAACATTTTGGTGGTTCACAAA

* Color: Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence

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