VISDB - VIS Curation

Basic Information

VIS ID

TVIS20004225

Fusion name

HPV-GTF2IRD1 integration

State

Validated

Fusion type

Deatction Method

PCR and Sanger sequencing

Curated Way

Curated

Sample

Cell line

Disease

Cervical carcinoma

Quality evaluation

Perfect

Reported year

2019

Pubmed ID

30679491

Virus Sequence

Virus name

Subtype

Reference genome

Not givenEdit

Strand

Gene

Region type

Start

End

Orient

Integrated Sequence

Host Sequence

Chromosome

Cytoband

Reference genome

GRCh37.p10 Edit

Start

End

Orient

Location type

Fragile sites / regions

FRA7J

Target gene

GTF2IRD1

Target sequence

Junction sequence

iHostLeftEnd

iHostRightBegin

iVirusLeft

iVirusRight

Junction sequence preview

CAAGCCTGGGGCTATTTCTAGGCGAGAGGTGGCAGTGACTTGAGCCAGGGCAGGGACAGTAGGGGTGGAGGTTTGGAAAACGGCTGGAGCAGAACTTCTGTGTCACTGTGAGGTACCATTGGATATTTGTCAGTCTATTTGTAAATATCCTGATTATTTACAAATGTCTGCAGATCCTTATGGGGATTCCATGTTTTTTTGCTTACGGCGTGAGCAGCTTTTTGCTAGGCATTTTTGGAATAGGGCAGGT

* Color: Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence

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