VISDB - VIS Curation

Basic Information

VIS ID

TVIS20004231

Fusion name

HPV-chr13:q22.1 integration

State

Validated

Fusion type

Deatction Method

WGS, RNA-seq, Whole-Exome sequencing, PCR

Curated Way

Curated

Sample

Tumor

Disease

Head and neck squamous cell carcinoma

Quality evaluation

Perfect

Reported year

2014

Pubmed ID

25313082

Virus Sequence

Virus name

Subtype

Reference genome

AY686584 Edit

Strand

Gene

Region type

Start

End

Orient

Integrated Sequence

Host Sequence

Chromosome

Cytoband

Reference genome

GRCh37/hg19 Edit

Start

End

Orient

Location type

Fragile sites / regions

FRA13B

Nearby gene

PSMD10P3(-9064) ; KLF5(+9066) ;

Nearest cancer gene

KLF5(TSG, +9066) ;

Target sequence

Junction sequence

iHostLeftEnd

iHostRightBegin

iVirusLeft

iVirusRight

Junction sequence preview

TTTGCTTTTTGTCCAGATGTCTTTGCT---CAAAAAAAAAAAAAAAAAAAAAAA

* Color: Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence

Please provide your email address for further verification:

Edit link