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VISDB
Viral Integration Site DataBase
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My curation
TVIS20004233
Basic Information
VIS ID
TVIS20004233
Fusion name
HPV-THAP12 integration
State
Validated
Fusion type
Deatction Method
WGS, RNA-seq, Whole-Exome sequencing, PCR
Curated Way
Curated
Sample
Tumor
Disease
Head and neck squamous cell carcinoma
Quality evaluation
Perfect
Reported year
2014
Pubmed ID
25313082
Virus Sequence
Virus name
Subtype
Reference genome
AY686584
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Strand
Gene
Region type
Start
End
Orient
Integrated Sequence
TTTGGTATGAGTTTAATGAAATTTCTGCAAGGGTCTGTAATATGTTTTGTAAATTCTAAAAGCCATTTTTGGTTACAACCATTAGCAGATGCCAAAATAG| |GTATGTTAGATGATGCTACAGTGCCCTGTTGGAACTACATAGATGACAATTTAAGAAATGCATTGGATGGAAATTTAGTTTCTATGGATGTAAAGCATAG
Host Sequence
Chromosome
Cytoband
Reference genome
GRCh37/hg19
Edit
Start
End
Orient
Location type
Fragile sites / regions
FRA11H
Target gene
THAP12
Target sequence
Junction sequence
TTGTCATCTATATAGTTCCAACAGGGCACTGTAGCATCATCTAACATAC---TATCATTAGAGGTGTTTTAGCAAGGGCAAAGATGCCCATCTGTCAGGAATGC
iHostLeftEnd
iHostRightBegin
iVirusLeft
iVirusRight
Junction sequence preview
TTGTCATCTATATAGTTCCAACAGGGCACTGTAGCATCATCTAACATAC---TATCATTAGAGGTGTTTTAGCAAGGGCAAAGATGCCCATCTGTCAGGAATGC
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Human Sequence
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Virus Sequence
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Overlapped sequence
/
Unknown sequence
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