VISDB - VIS Curation

Basic Information

VIS ID

TVIS20004273

Fusion name

HPV-ZBTB7C integration

State

Validated

Fusion type

Deatction Method

WGS, RNA-seq, Whole-Exome sequencing, PCR

Curated Way

Curated

Sample

Tumor

Disease

Head and neck squamous cell carcinoma

Quality evaluation

Perfect

Reported year

2014

Pubmed ID

25313082

Virus Sequence

Virus name

Subtype

Reference genome

AY686584 Edit

Strand

Gene

Region type

Start

End

Orient

Integrated Sequence

Host Sequence

Chromosome

Cytoband

Reference genome

GRCh37/hg19 Edit

Start

End

Orient

Location type

Target gene

ZBTB7C

Nearest cancer gene

ZBTB7C(TSG, No orient, 0)

Target sequence

Junction sequence

iHostLeftEnd

iHostRightBegin

iVirusLeft

iVirusRight

Junction sequence preview

TTCAGACACCATTTTAATATAATCTGGATATTT---[TAATATAA]---TCAGAAATGGGGGGAGCGCCAGGGGAGTGAATCTTTCCTGTTGATCATCTTACCCCGGTG

* Color: Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence

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