VISDB - VIS Curation

Basic Information

VIS ID

TVIS20004298

Fusion name

HPV-SLC9A7 integration

State

Validated

Fusion type

Deatction Method

WGS, RNA-seq, Whole-Exome sequencing, PCR

Curated Way

Curated

Sample

Tumor

Disease

Head and neck squamous cell carcinoma

Quality evaluation

Perfect

Reported year

2014

Pubmed ID

25313082

Virus Sequence

Virus name

Subtype

Reference genome

AY686584 Edit

Strand

Gene

Region type

Start

End

Orient

Integrated Sequence

Host Sequence

Chromosome

Cytoband

Reference genome

GRCh37/hg19 Edit

Start

End

Orient

Location type

Target gene

SLC9A7

Target sequence

Junction sequence

iHostLeftEnd

iHostRightBegin

iVirusLeft

iVirusRight

Junction sequence preview

TGACTCTACGCTTCGGTTGTGCGT---[CTGTTATTATTGACTGTCTGTC]---AATTGTGTTGTGGTTAT---[ATGAAAACTTTGACAGA]---CAGTGAGCTGTGACTGCACCA

* Color: Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence

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