VISDB - VIS Curation

Basic Information

VIS ID

TVIS20004410

Fusion name

HPV-chr17:q23.1 integration

State

Validated

Fusion type

Deatction Method

DIPS-PCR

Curated Way

Curated

Sample

Tumor

Disease

Oropharyngeal squamous cell carcinoma

Quality evaluation

Normal

Reported year

2014

Pubmed ID

Virus Sequence

Virus name

Subtype

Reference genome

NC_001526.1 Edit

Strand

Gene

Region type

Start

End

Orient

Integrated Sequence

Host Sequence

Chromosome

Cytoband

Reference genome

Start

End

Orient

Location type

Nearby gene

MIR21(-1486) ; RNU6-450P(+3697) ;

Nearest cancer gene

MIR21(OG, -1486) ;

Target sequence

Junction sequence

iHostLeftEnd

iHostRightBegin

iVirusLeft

iVirusRight

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