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VISDB
Viral Integration Site DataBase
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My curation
TVIS20004581
Basic Information
VIS ID
TVIS20004581
Fusion name
HPV-chr7:q11.21 integration
State
Validated
Fusion type
Deatction Method
FISH, WGS, RNA-seq, qPCR
Curated Way
Curated
Sample
Cell line
Disease
Cervical carcinoma
Quality evaluation
Perfect
Reported year
2014
Pubmed ID
24201445
Virus Sequence
Virus name
Subtype
Reference genome
NC_001526.2
Edit
Strand
Gene
Region type
Start
End
Orient
Integrated Sequence
TTACGAAAACGACGTAAACGTTTAC
Host Sequence
Chromosome
Cytoband
Reference genome
GRCh37/hg19
Edit
Start
End
Orient
Location type
Fragile sites / regions
FRA7J
Target sequence
gagtcggagaGTggctgggcacagtg
Junction sequence
GTTACGAAAACGACGTAAACGTTTAGAGTCGGAGAGTGGCTGGGCACAGTG
iHostLeftEnd
iHostRightBegin
iVirusLeft
iVirusRight
Junction sequence preview
GTTACGAAAACGACGTAAACGTTTAGAGTCGGAGAGTGGCTGGGCACAGTG
* Color:
Human Sequence
/
Virus Sequence
/
Overlapped sequence
/
Unknown sequence
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