VISDB - VIS Curation

Basic Information

VIS ID

TVIS20004606

Fusion name

HPV-chr9:q22.33 integration

State

Validated

Fusion type

Deatction Method

FISH, WGS, RNA-seq, qPCR

Curated Way

Curated

Sample

Tumor

Disease

Cervical carcinoma

Quality evaluation

Perfect

Reported year

2014

Pubmed ID

24201445

Virus Sequence

Virus name

Subtype

Reference genome

NC_001526.2 Edit

Strand

Gene

Region type

Start

End

Orient

Integrated Sequence

Host Sequence

Chromosome

Cytoband

Reference genome

GRCh37/hg19 Edit

Start

End

Orient

Location type

Nearby gene

PTCSC2(-1044) ; LOC110121153(+4822) ;

Target sequence

Junction sequence

iHostLeftEnd

iHostRightBegin

iVirusLeft

iVirusRight

Junction sequence preview

GGCCTCCCACCGGCCGACGACACCAGGAATTGTGTGCCCCATCTGTTCTC

* Color: Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence

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