VISDB - VIS Curation

Basic Information

VIS ID

TVIS20004863

Fusion name

HPV-chr5:q11.2 integration

State

Validated

Fusion type

Deatction Method

APOT and sequencing

Curated Way

Curated

Sample

Cell line

Disease

Cervical carcinoma

Quality evaluation

Normal

Reported year

2008

Pubmed ID

18922896

Virus Sequence

Virus name

Subtype

Reference genome

Not givenEdit

Strand

Gene

Region type

Start

End

Orient

Integrated Sequence

Host Sequence

Chromosome

Cytoband

Reference genome

Not givenEdit

Start

End

Orient

Location type

Target sequence

Junction sequence

iHostLeftEnd

iHostRightBegin

iVirusLeft

iVirusRight

Junction sequence preview

CACACGNAGACATTCGTACTTTGGAAGACCTGTTAATGGGCACACTAGGAATTGTGTGCCCCATCTGTTCTCAGAAACCATAATCTACCATGGCTGATCCTGCAGGGTTGTTCTCATGCACAAGAATCATGCGGAAAGAATCTTCCTAGCTTTCCCTCCCACGAGAATTATGTCCACTNGACTTGGCACATAACAGACCTGACGTNNNACCCTGACAA

* Color: Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence

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