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Viral Integration Site DataBase
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My curation
TVIS20004869
Basic Information
VIS ID
TVIS20004869
Fusion name
HPV-chr9:p24.3 integration
State
Validated
Fusion type
Deatction Method
APOT and sequencing
Curated Way
Curated
Sample
Cell line
Disease
Cervical carcinoma
Quality evaluation
Good
Reported year
2008
Pubmed ID
18922896
Virus Sequence
Virus name
Subtype
Reference genome
Not given
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Strand
Gene
Region type
Start
End
Orient
Integrated Sequence
Host Sequence
Chromosome
Cytoband
Reference genome
Not given
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Start
End
Orient
Location type
Target sequence
Junction sequence
TATTAGGCAGCACTTGGCCNACCACTCCGCCGCGACCCATACCAAAGCCGTCGCCTTGGGCACCGAAGAAACACAGACGACTATCCAGCGACCAAGATCAGAGCCAGACACCGGAAACCCCTGCCACACCACTAAGTTGTTGCACAGAGACTCAGTGGACAGTGCTCCAAGCCNTGTGGAAGCTGCCAAGTCTTGGGGCTTGCACCCTCTGNAGCANNNTGGGCAGATGTAGTGTGGCGNCTTTCCTTCTGGGCTGGGATGCAGGGTANGAAGTNGCTAAACAGCATACAGAAAAGGGACCCTGGGCCCANCCCACNAAACCACTTTTTCCTCCNAAACCTNTGGGCNTNNGNNGGNAGGNTNGCCATGAANAACNCTGACATGCCCTGNANANNCTTTCCNCNTTGNNTTGNNNATTNANATTCAGCTCCTTGTTACTTATTTTTTTTTCTGCNNCCNGCTTGAATTTCTCCTCAGAAAATGGGATTTTCTTTTCTAGCACATTGTCAGGCTGCAAATTTTCCAAACTTTTGTGCTCTGCTTCCCTTATAAAACTGAATACCTTTAACAGCAAAAAAAAAAAAAAAAAA
iHostLeftEnd
iHostRightBegin
iVirusLeft
iVirusRight
Junction sequence preview
TATTAGGCAGCACTTGGCCNACCACTCCGCCGCGACCCATACCAAAGCCGTCGCCTTGGGCACCGAAGAAACACAGACGACTATCCAGCGACCAAGATCAGAGCCAGACACCGGAAACCCCTGCCACACCACTAAGTTGTTGCACAGAGACTCAGTGGACAGTGCTCCAAGCCNTGTGGAAGCTGCCAAGTCTTGGGGCTTGCACCCTCTGNAGCANNNTGGGCAGATGTAGTGTGGCGNCTTTCCTTCTGGGCTGGGATGCAGGGTANGAAGTNGCTAAACAGCATACAGAAAAGGGACCCTGGGCCCANCCCACNAAACCACTTTTTCCTCCNAAACCTNTGGGCNTNNGNNGGNAGGNTNGCCATGAANAACNCTGACATGCCCTGNANANNCTTTCCNCNTTGNNTTGNNNATTNANATTCAGCTCCTTGTTACTTATTTTTTTTTCTGCNNCCNGCTTGAATTTCTCCTCAGAAAATGGGATTTTCTTTTCTAGCACATTGTCAGGCTGCAAATTTTCCAAACTTTTGTGCTCTGCTTCCCTTATAAAACTGAATACCTTTAACAGCAAAAAAAAAAAAAAAAAA
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Human Sequence
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Virus Sequence
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Overlapped sequence
/
Unknown sequence
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