VISDB - VIS Curation

Basic Information

VIS ID

TVIS20005046

Fusion name

HPV-EPSTI1 integration

State

Not Validated

Fusion type

Deatction Method

WGS, RNA-seq, Whole-Exome sequencing, PCR

Curated Way

Curated

Sample

Tumor

Disease

Head and neck squamous cell carcinoma

Quality evaluation

Perfect

Reported year

2014

Pubmed ID

25313082

Virus Sequence

Virus name

Subtype

Reference genome

Not givenEdit

Strand

Gene

Region type

Start

End

Orient

Integrated Sequence

Host Sequence

Chromosome

Cytoband

Reference genome

GRCh37/hg19 Edit

Start

End

Orient

Location type

Target gene

EPSTI1

Target sequence

Junction sequence

iHostLeftEnd

iHostRightBegin

iVirusLeft

iVirusRight

Junction sequence preview

ACATAACTGGGTATGAGCAAATGACATTCACACACCTATAAGCACTCACAGAGC---CTGTATCTTAAACATTTTAAACTATTTGATTCACCTTTTAAATGCAC

* Color: Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence

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