VISDB - VIS Curation

Basic Information

VIS ID

TVIS20005073

Fusion name

HPV-RARA integration

State

Validated

Fusion type

Deatction Method

RNA-Seq+RT-PCR

Curated Way

Curated

Sample

Tumor

Disease

Squamous-cell carcinoma

Quality evaluation

Good

Reported year

2014

Pubmed ID

Virus Sequence

Virus name

Subtype

Reference genome

HQ644271.1 Edit

Strand

Gene

Region type

Start

End

Orient

Integrated Sequence

Host Sequence

Chromosome

Cytoband

Reference genome

GRCh37/hg19 Edit

Start

End

Orient

Location type

Target gene

Nearby gene

CDC6 ; GJD3(+) ;

Nearest cancer gene

RARA(OG, No orient, 0)

Target sequence

Junction sequence

iHostLeftEnd

iHostRightBegin

iVirusLeft

iVirusRight

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