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Curation
Gene
Target gene
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Oncogene
Tumor suppressor gene
Nearby gene
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Oncogene
Tumor suppressor gene
MicroRNA
RNA-interaction
ncRNA
Host2Host
Host2Virus
Virus2Host
• miRNA
Host2Host
Host2Virus
Virus2Host
• lncRNA
Host2Host
Host2Virus
Virus2Host
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VISDB
Viral Integration Site DataBase
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My curation
TVIS20005101
Basic Information
VIS ID
TVIS20005101
Fusion name
HPV-chr9:q22.32 integration
State
Validated
Fusion type
Deatction Method
RNA-Seq+RT-PCR
Curated Way
Curated
Sample
Tumor
Disease
Squamous-cell carcinoma
Quality evaluation
Good
Reported year
2014
Pubmed ID
24390348
Virus Sequence
Virus name
Subtype
Reference genome
HQ644271.1
Edit
Strand
Gene
Region type
Start
End
Orient
Integrated Sequence
Host Sequence
Chromosome
Cytoband
Reference genome
GRCh37/hg19
Edit
Start
End
Orient
Location type
Target gene
AOPEP
;
FANCC
Nearby gene
FBP1
;
PTCH1
(+) ;
Target sequence
Junction sequence
iHostLeftEnd
iHostRightBegin
iVirusLeft
iVirusRight
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