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Curation
Gene
Target gene
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Oncogene
Tumor suppressor gene
Nearby gene
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Oncogene
Tumor suppressor gene
MicroRNA
RNA-interaction
ncRNA
Host2Host
Host2Virus
Virus2Host
• miRNA
Host2Host
Host2Virus
Virus2Host
• lncRNA
Host2Host
Host2Virus
Virus2Host
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VISDB
Viral Integration Site DataBase
Homepage
My curation
TVIS30001167
Basic Information
VIS ID
TVIS30001167
Fusion name
HIV-MDC1 integration
State
Validated
Fusion type
Deatction Method
QiaQuick PCR and Sequencing
Curated Way
Curated
Sample
PBMC
Disease
HIV-infected disease
Quality evaluation
Good
Reported year
2014
Pubmed ID
25011556
Virus Sequence
Virus name
Subtype
Reference genome
Not given
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Strand
Gene
Region type
Start
End
Orient
Integrated Sequence
Host Sequence
Chromosome
Cytoband
Reference genome
GRCh37/hg19
Edit
Start
End
Orient
Location type
Fragile sites / regions
FRA6H
Target gene
MDC1
Nearest cancer gene
MDC1
(TSG, No orient, 0)
Target sequence
GGTATCCCTTCCAGGGAAATAAATTCTATAGACTCTCTTTTCTTCCCTTCACAGTGATGAA
Junction sequence
iHostLeftEnd
iHostRightBegin
iVirusLeft
iVirusRight
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