VISDB - VIS Curation

Basic Information

VIS ID

TVIS30013942

Fusion name

HIV-KCNN1 integration

State

Validated

Fusion type

Deatction Method

invPCR+RT-PCR

Curated Way

download(RID)

Sample

T cell

Disease

HIV-infected disease

Quality evaluation

Normal

Reported year

2004

Pubmed ID

15163705

Virus Sequence

Virus name

Subtype

Reference genome

Not givenEdit

Strand

Gene

Region type

Start

End

Orient

Integrated Sequence

Host Sequence

Chromosome

Cytoband

Reference genome

GRCh37/hg19 Edit

Start

End

Orient

Location type

Fragile sites / regions

FRA19B

Target gene

KCNN1

Target sequence

Junction sequence

iHostLeftEnd

iHostRightBegin

iVirusLeft

iVirusRight

Junction sequence preview

AAGGTTATTC

* Color: Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence

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