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Curation
Gene
Target gene
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Oncogene
Tumor suppressor gene
Nearby gene
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Oncogene
Tumor suppressor gene
MicroRNA
RNA-interaction
ncRNA
Host2Host
Host2Virus
Virus2Host
• miRNA
Host2Host
Host2Virus
Virus2Host
• lncRNA
Host2Host
Host2Virus
Virus2Host
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VISDB
Viral Integration Site DataBase
Homepage
My curation
TVIS30013967
Basic Information
VIS ID
TVIS30013967
Fusion name
HIV-RNF111 integration
State
Validated
Fusion type
Deatction Method
invPCR+RT-PCR
Curated Way
download(RID)
Sample
T cell
Disease
HIV-infected disease
Quality evaluation
Normal
Reported year
2004
Pubmed ID
15163705
Virus Sequence
Virus name
Subtype
Reference genome
Not given
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Strand
Gene
Region type
Start
End
Orient
Integrated Sequence
Host Sequence
Chromosome
Cytoband
Reference genome
GRCh37/hg19
Edit
Start
End
Orient
Location type
Target gene
RNF111
Nearby gene
RORA
(No orient, 65703)
Nearest cancer gene
RNF111
(TSG, No orient, 0)
Target sequence
Junction sequence
AAGGTCACTC
iHostLeftEnd
iHostRightBegin
iVirusLeft
iVirusRight
Junction sequence preview
AAGGTCACTC
* Color:
Human Sequence
/
Virus Sequence
/
Overlapped sequence
/
Unknown sequence
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