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Curation
Gene
Target gene
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Oncogene
Tumor suppressor gene
Nearby gene
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Oncogene
Tumor suppressor gene
MicroRNA
RNA-interaction
ncRNA
Host2Host
Host2Virus
Virus2Host
• miRNA
Host2Host
Host2Virus
Virus2Host
• lncRNA
Host2Host
Host2Virus
Virus2Host
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VISDB
Viral Integration Site DataBase
Homepage
My curation
TVIS30015501
Basic Information
VIS ID
TVIS30015501
Fusion name
HIV-STAT3 integration
State
Validated
Fusion type
Deatction Method
LM PCR
Curated Way
Curated
Sample
PBMC
Disease
HIV-infected disease
Quality evaluation
Good
Reported year
2014
Pubmed ID
24968937
Virus Sequence
Virus name
Subtype
Reference genome
Not given
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Strand
Gene
Region type
Start
End
Orient
Integrated Sequence
Host Sequence
Chromosome
Cytoband
Reference genome
GRCh37/hg19
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Start
End
Orient
Location type
Target gene
STAT3
Nearest cancer gene
STAT3
(TSG, No orient, 0)
Target sequence
TTTACTGTAACTGTTTTACTGGAAAAGACCTCAAAGAGCCCATGTTATTTCACAATTTCAATTTTGGTTTTTCAAATTACAAGTTAATCTAAAGAACTCCACTAAGTTCTAACTACATTACTTCATATCTACGGAATAATTCTAAGCCTGTGGGTTTTTAAAAAAAttttattagacattctagaattgggcaacacttcattcaatgccataggatgaatgttcTCCCCAAGCCTGTGACTTAATAACTActtc
Junction sequence
iHostLeftEnd
iHostRightBegin
iVirusLeft
iVirusRight
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