VISDB - VIS Curation

Basic Information

VIS ID

TVIS42001116

Fusion name

EBV-TNFAIP3 integration

State

Validated

Fusion type

Deatction Method

Sanger sequencing

Curated Way

Curated

Sample

Tumor

Disease

Nasopharyngeal carcinoma

Quality evaluation

Perfect

Reported year

2015

Pubmed ID

25355872

Virus Sequence

Virus name

Subtype

Reference genome

NC007605 Edit

Strand

Gene

Region type

Start

End

Orient

Integrated Sequence

Host Sequence

Chromosome

Cytoband

Reference genome

GRCh37/hg19 Edit

Start

End

Orient

Location type

Target gene

TNFAIP3

Nearest cancer gene

TNFAIP3(TSG, No orient, 0)

Target sequence

Junction sequence

iHostLeftEnd

iHostRightBegin

iVirusLeft

iVirusRight

Junction sequence preview

GCAGCTTGTCCTTGAGGAGGGCATACTGGGAGCCAGCCGAGGCCCCAAGCGTTTGTGTATTCTCATACATATTTTTTCCTTTTGGTCTTCAGGTTGGATGAA

* Color: Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence

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