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VISDB
Viral Integration Site DataBase
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My curation
TVIS42001140
Basic Information
VIS ID
TVIS42001140
Fusion name
EBV-chr2:p13 integration
State
Validated
Fusion type
Deatction Method
RT-PCR
Curated Way
Curated
Sample
Cell line
Disease
B-cell lymphoma
Quality evaluation
Perfect
Reported year
2016
Pubmed ID
26819646
Virus Sequence
Virus name
Subtype
Reference genome
V01555
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Strand
Gene
Region type
Start
End
Orient
Integrated Sequence
CGTGACCAAGGGGCCCGTGGGTGACACAGGCAACCCTGACAAAGGCCCCCCAGGAAAGACCCCCGGGGGGCATCGGGGGGGGTGTTGGCGGGGGCATGGG| |GGGGTCGGATTTCGCCCTTATTGCCCTGTTT
Host Sequence
Chromosome
Cytoband
Reference genome
AC009970
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Start
End
Orient
Location type
Target sequence
Junction sequence
CAACCCTGACAAAGGCCCCCCAGGAAAGACCCCCGGGGGGCATCGGGGGGGGTGTTGGCGGGGGCATGGGCACCAGAGCTCAGGCCTGCTCCTCAACATCATGAGTTACGACCAGGA
iHostLeftEnd
iHostRightBegin
iVirusLeft
iVirusRight
Junction sequence preview
CAACCCTGACAAAGGCCCCCCAGGAAAGACCCCCGGGGGGCATCGGGGGGGGTGTTGGCGGGGGCATGGGCACCAGAGCTCAGGCCTGCTCCTCAACATCATGAGTTACGACCAGGA
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Human Sequence
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Virus Sequence
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Overlapped sequence
/
Unknown sequence
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