Search Results
| No. | VISDB ID | Virus Name | Subtype | Virus Genome | Breakpoint 1 | Breakpoint 2 | Human Genome | Chr | Start | End | Loci | Target Gene | Sample Type | Disease | Method | PubMed ID | Year | Curated Way |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 4241 | TVIS44015454 | Human T-lymphotropic Virus | - | Not given | - | - | hg19 | chr22 | 38070931 | 38070931 | q13.1 | PICK1, ENSG00000233739 | Nontumor | Adult T-cell leukemia | High throughput sequenicng | 24735963 | 2014 | VISDB1.0 |
| 4242 | TVIS20004404 | Human Papillomavirus | HPV16 |
NC_001526.1 |
1767 | - | GRCh37.p5 | chr22 | 32866733 | 32866733 | q12.3 | SYN3 | Tumor | Oropharyngeal squamous cell carcinoma | Detection of integrated papilloma sequences & PCR (DIPS-PCR) | 24586376 | 2014 | VISDB1.0 |
| 4243 | TVIS20004408 | Human Papillomavirus | HPV16 |
NC_001526.1 |
1334 | - | GRCh37.p5 | chr22 | 24837056 | 24837056 | q11.23 | SGSM1 | Tumor | Oropharyngeal squamous cell carcinoma | Detection of integrated papilloma sequences & PCR (DIPS-PCR) | 24586376 | 2014 | VISDB1.0 |
| 4244 | TVIS20004425 | Human Papillomavirus | HPV16 |
NC_001526.1 |
- | - | GRCh37.p5 | chr22 | 31906205 | 31906205 | q12.3 | DEPDC5, ENSG00000285404 | Tumor | Oropharyngeal squamous cell carcinoma | Amplification of Papillomavirus Oncogene Transcripts (APOT) | 24586376 | 2014 | VISDB1.0 |
| 4245 | TVIS20004429 | Human Papillomavirus | HPV16 |
NC_001526.1 |
- | - | GRCh37.p5 | chr22 | 44950929 | 44950929 | q13.31 | PHF21B | Tumor | Oropharyngeal squamous cell carcinoma | Amplification of Papillomavirus Oncogene Transcripts (APOT) | 24586376 | 2014 | VISDB1.0 |
| 4246 | TVIS20005077 | Human Papillomavirus | HPV31 | Not given | - | - | hg19 | chr22 | 46109303 | 46125439 | q13.31 | MIRLET7A3, MIR4763, MIRLET7B, MIRLET7BHG | Tumor | Squamous-cell carcinoma | RNA-Seq+RT-PCR | 24390348 | 2014 | VISDB1.0 |
| 4247 | TVIS20005108 | Human Papillomavirus | HPV33 | Not given | - | - | hg19 | chr22 | 17633057 | 17633623 | q11.21 | BCL2L13 | Tumor | Squamous-cell carcinoma | RNA-Seq+RT-PCR | 24390348 | 2014 | VISDB1.0 |
| 4248 | TVIS10019986 | Hepatitis B virus | - |
NC_003977.1 |
- | - | hg19 | chr22 | 40997082 | 40997235 | q13.2 | ENSG00000304944 | Nontumor | Hepatocellular carcinoma | de novo assembly of RNA-seq reads | 24085110 | 2013 | VISDB1.0 |
| 4249 | TVIS30003367 | Human Immunodeficiency Virus | - | Not given | - | - | hg19 | chr22 | 17716111 | 17716111 | q11.21 | BCL2L13 | Cell line | HIV infection/AIDS | QiaQuick PCR and Sequencing | 23953889 | 2013 | VISDB1.0 |
| 4250 | TVIS30003368 | Human Immunodeficiency Virus | - | Not given | - | - | hg19 | chr22 | 19117686 | 19117686 | q11.21 | DGCR2 | Cell line | HIV infection/AIDS | QiaQuick PCR and Sequencing | 23953889 | 2013 | VISDB1.0 |
