Search Results


VISDB ID Virus Name Subtype Virus Genome Breakpoint 1 Breakpoint 2 Human Genome Chromosome Start End Loci Target Gene Sample Type Disease Method PubMed ID Year Curated Way ▼
TVIS20004414 Human Papillomavirus HPV16 NC_001526.1
 1124 - GRCh37.p5 7 100152441 100152441 q21.1 LAMTOR4 Tumor Oropharyngeal squamous cell carcinoma Detection of integrated papilloma sequences & PCR (DIPS-PCR) 24586376 2014 VISDB1.0
TVIS20004416 Human Papillomavirus HPV16 NC_001526.1
 2908 - GRCh37.p5 7 104518626 104518626 q22.2 LHFPL3 Tumor Oropharyngeal squamous cell carcinoma Detection of integrated papilloma sequences & PCR (DIPS-PCR) 24586376 2014 VISDB1.0
TVIS10014885 Hepatitis B virus - NC_003977.1
 1212 1983 GRCh37.p10 7 98934504 98934704 q22.1 TRRAP Cell line Hepatocellular carcinoma PCR and Sanger sequencing 24582836 2014 VISDB1.0
TVIS20005079 Human Papillomavirus HPV18 Not given - - hg19 7 149188463 149188982 q36.1 - Tumor Adenocarcinoma RNA-Seq+RT-PCR 24390348 2014 VISDB1.0
TVIS20005081 Human Papillomavirus HPV16 HQ644271.1
 - - hg19 7 43645348 43770724 p13 ENSG00000302335, ENSG00000229497, STK17A, COA1, BLVRA Tumor Squamous-cell carcinoma RNA-Seq+RT-PCR 24390348 2014 VISDB1.0
TVIS20005088 Human Papillomavirus HPV16 HQ644271.1
 - - hg19 7 62508811 62508944 q11.21 - Tumor Squamous-cell carcinoma Whole-genome sequencing 24390348 2014 VISDB1.0
TVIS20005116 Human Papillomavirus HPV45 Not given - - hg19 7 17362902 17404643 p21.1 SNORA63, ENSG00000283321, LINC02888 Tumor Squamous-cell carcinoma RNA-Seq+RT-PCR 24390348 2014 VISDB1.0
TVIS20004557 Human Papillomavirus HPV16 NC_001526.2
 685 719 hg19 7 54076318 54076346 p11.2 - Cell line Cervical cancer FISH, WGS, RNA-seq, qPCR 24201445 distinct from chromothripsis and other mutational processes VISDB1.0
TVIS20004569 Human Papillomavirus HPV16 NC_001526.2
 3199 3226 hg19 7 6925188 6925214 p22.1 ENSG00000295732, ALG1L5P, ENSG00000295758 Cell line Cervical cancer FISH, WGS, RNA-seq, qPCR 24201445 distinct from chromothripsis and other mutational processes VISDB1.0
TVIS20004573 Human Papillomavirus HPV16 NC_001526.2
 4541 4578 hg19 7 7639527 7639559 p21.3 RPA3 Cell line Cervical cancer FISH, WGS, RNA-seq, qPCR 24201445 distinct from chromothripsis and other mutational processes VISDB1.0