Search Results


VISDB ID Virus Name Subtype Virus Genome Breakpoint 1 Breakpoint 2 Human Genome Chromosome Start End Loci Target Gene Sample Type Disease Method PubMed ID Year Curated Way ▼
TVIS20004415 Human Papillomavirus HPV16 NC_001526.1
 2894 - GRCh37.p5 8 127254511 127254511 q24.21 ENSG00000287781, PCAT1 Tumor Oropharyngeal squamous cell carcinoma Detection of integrated papilloma sequences & PCR (DIPS-PCR) 24586376 2014 VISDB1.0
TVIS20004417 Human Papillomavirus HPV16 NC_001526.1
 - - GRCh37.p5 8 63857113 63857113 p12.3 LINC01414 Tumor Oropharyngeal squamous cell carcinoma Amplification of Papillomavirus Oncogene Transcripts (APOT) 24586376 2014 VISDB1.0
TVIS20004418 Human Papillomavirus HPV16 NC_001526.1
 - - GRCh37.p5 8 63900301 63900301 p12.3 LINC01414 Tumor Oropharyngeal squamous cell carcinoma Amplification of Papillomavirus Oncogene Transcripts (APOT) 24586376 2014 VISDB1.0
TVIS20004441 Human Papillomavirus HPV16 NC_001526.1
 - - GRCh37.p5 8 40703860 40703860 p11.21 ZMAT4 Tumor Oropharyngeal squamous cell carcinoma Amplification of Papillomavirus Oncogene Transcripts (APOT) 24586376 2014 VISDB1.0
TVIS10014882 Hepatitis B virus - NC_003977.1
 1539 1622 GRCh37.p10 8 41636404 41636685 p11 - Cell line Hepatocellular carcinoma PCR and Sanger sequencing 24582836 2014 VISDB1.0
TVIS20005060 Human Papillomavirus HPV18 Not given - - hg19 8 127730721 127794689 q24.21 MYC, ENSG00000308490, CASC11, PVT1 Tumor Neuroendocrine carcinoma RNA-Seq+RT-PCR 24390348 2014 VISDB1.0
TVIS20005061 Human Papillomavirus HPV18 Not given - - hg19 8 37693448 37694703 p11.23 ENSG00000308809 Tumor Squamous-cell carcinoma RNA-Seq+RT-PCR 24390348 2014 VISDB1.0
TVIS20005062 Human Papillomavirus HPV18 Not given - - hg19 8 127289767 127302514 q24.21 ENSG00000271509, CASC8, PCAT1 Tumor Neuroendocrine carcinoma RNA-Seq+RT-PCR 24390348 2014 VISDB1.0
TVIS20005099 Human Papillomavirus HPV18 Not given - - hg19 8 143419896 143428273 q24.3 MAFA Tumor Adenocarcinoma RNA-Seq+RT-PCR 24390348 2014 VISDB1.0
TVIS20005100 Human Papillomavirus HPV18 Not given - - hg19 8 143419680 143419996 q24.3 MAFA Tumor Adenocarcinoma Whole-genome sequencing 24390348 2014 VISDB1.0