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VISDB ID Virus Name Subtype Virus Genome Breakpoint 1 Breakpoint 2 Human Genome Chr Start End Loci Target Gene Sample Type Disease Method PubMed ID Year Curated Way ▼
TVIS20020206 Human Papillomavirus HPV16 NC_001526.2
 6392 6393 hg19 chr16 7982969 7982970 p13.2 ENSG00000260289, ENSG00000309099 Tumor-derived tumor samples and cell lines Oropharyngeal squamous cell carcinoma Whole genome sequencing, followed by bioinformatic analysis using tools like Hydra, DELLY, and SplazerS 34903527 2022 Curated
TVIS20020207 Human Papillomavirus HPV16 NC_001526.2
 707 708 hg19 chr19 42596206 42596207 q13.2 LIPE-AS1 Tumor-derived tumor samples and cell lines Oropharyngeal squamous cell carcinoma Whole genome sequencing, followed by bioinformatic analysis using tools like Hydra, DELLY, and SplazerS 34903527 2022 Curated
TVIS20020208 Human Papillomavirus HPV16 NC_001526.2
 1326 1327 hg19 chr19 42596265 42596266 q13.2 LIPE-AS1 Tumor-derived tumor samples and cell lines Oropharyngeal squamous cell carcinoma Whole genome sequencing, followed by bioinformatic analysis using tools like Hydra, DELLY, and SplazerS 34903527 2022 Curated
TVIS20020209 Human Papillomavirus HPV16 NC_001526.2
 5941 5942 hg19 chr19 43199696 43199697 q13.31 PSG4 Tumor-derived tumor samples and cell lines Oropharyngeal squamous cell carcinoma Whole genome sequencing, followed by bioinformatic analysis using tools like Hydra, DELLY, and SplazerS 34903527 2022 Curated
TVIS20020210 Human Papillomavirus HPV16 NC_001526.2
 6004 6005 hg19 chr19 44671993 44671994 q13.31 CEACAM19, CEACAM16-AS1 Tumor-derived tumor samples and cell lines Oropharyngeal squamous cell carcinoma Whole genome sequencing, followed by bioinformatic analysis using tools like Hydra, DELLY, and SplazerS 34903527 2022 Curated
TVIS20020211 Human Papillomavirus HPV16 NC_001526.2
 5888 5889 hg19 chr19 44672647 44672648 q13.31 CEACAM19, CEACAM16-AS1 Tumor-derived tumor samples and cell lines Oropharyngeal squamous cell carcinoma Whole genome sequencing, followed by bioinformatic analysis using tools like Hydra, DELLY, and SplazerS 34903527 2022 Curated
TVIS20020212 Human Papillomavirus HPV16 NC_001526.2
 4478 4479 hg19 chr21 16486276 16486277 q21.1 MIR99AHG Tumor-derived tumor samples and cell lines Oropharyngeal squamous cell carcinoma Whole genome sequencing, followed by bioinformatic analysis using tools like Hydra, DELLY, and SplazerS 34903527 2022 Curated
TVIS20020213 Human Papillomavirus HPV16 NC_001526.2
 4477 4478 hg19 chr3 21408490 21408491 p24.3 - Tumor-derived tumor samples and cell lines Oropharyngeal squamous cell carcinoma Whole genome sequencing, followed by bioinformatic analysis using tools like Hydra, DELLY, and SplazerS 34903527 2022 Curated
TVIS20020214 Human Papillomavirus HPV16 NC_001526.2
 5793 5794 hg19 chr3 117951048 117951049 q13.32 LINC03051, LSAMP Tumor-derived tumor samples and cell lines Oropharyngeal squamous cell carcinoma Whole genome sequencing, followed by bioinformatic analysis using tools like Hydra, DELLY, and SplazerS 34903527 2022 Curated
TVIS20020215 Human Papillomavirus HPV16 NC_001526.2
 1834 1835 hg19 chr3 117951687 117951688 q13.32 LINC03051, LSAMP Tumor-derived tumor samples and cell lines Oropharyngeal squamous cell carcinoma Whole genome sequencing, followed by bioinformatic analysis using tools like Hydra, DELLY, and SplazerS 34903527 2022 Curated