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VISDB ID Virus Name Subtype Virus Genome Breakpoint 1 Breakpoint 2 Human Genome Chr Start End Loci Target Gene Sample Type Disease Method PubMed ID Year Curated Way ▼
TVIS20020416 Human Papillomavirus HPV16 NC_001526.2
 476 477 hg19 chr18 20964174 20964175 q11.1 ROCK1 Tumor-derived tumor samples and cell lines Oropharyngeal squamous cell carcinoma Whole genome sequencing, followed by bioinformatic analysis using tools like Hydra, DELLY, and SplazerS 34903527 2022 Curated
TVIS20020417 Human Papillomavirus HPV16 NC_001526.2
 459 479 hg19 chr9 63365771 63365785 q13 ENSG00000290549, ENSG00000290559 Tumor-derived tumor samples and cell lines Oropharyngeal squamous cell carcinoma Whole genome sequencing, followed by bioinformatic analysis using tools like Hydra, DELLY, and SplazerS 34903527 2022 Curated
TVIS20020418 Human Papillomavirus HPV16 NC_001526.2
 96 97 hg19 chr1 1519207 1519208 p36.33 ATAD3A Tumor-derived tumor samples and cell lines Oropharyngeal squamous cell carcinoma Whole genome sequencing, followed by bioinformatic analysis using tools like Hydra, DELLY, and SplazerS 34903527 2022 Curated
TVIS20020419 Human Papillomavirus HPV16 NC_001526.2
 5484 5485 hg19 chr1 242413415 242413416 q43 PLD5 Tumor-derived tumor samples and cell lines Oropharyngeal squamous cell carcinoma Whole genome sequencing, followed by bioinformatic analysis using tools like Hydra, DELLY, and SplazerS 34903527 2022 Curated
TVIS20020420 Human Papillomavirus HPV16 NC_001526.2
 5090 5091 hg19 chr1 242516736 242516737 q43 PLD5 Tumor-derived tumor samples and cell lines Oropharyngeal squamous cell carcinoma Whole genome sequencing, followed by bioinformatic analysis using tools like Hydra, DELLY, and SplazerS 34903527 2022 Curated
TVIS20020421 Human Papillomavirus HPV16 NC_001526.2
 2520 2521 hg19 chr1 242559965 242559966 q43 - Tumor-derived tumor samples and cell lines Oropharyngeal squamous cell carcinoma Whole genome sequencing, followed by bioinformatic analysis using tools like Hydra, DELLY, and SplazerS 34903527 2022 Curated
TVIS20020422 Human Papillomavirus HPV16 NC_001526.2
 4832 4833 hg19 chr10 79732607 79732608 q22.3 NUTM2B-AS1 Tumor-derived tumor samples and cell lines Oropharyngeal squamous cell carcinoma Whole genome sequencing, followed by bioinformatic analysis using tools like Hydra, DELLY, and SplazerS 34903527 2022 Curated
TVIS20020423 Human Papillomavirus HPV16 NC_001526.2
 1069 1070 hg19 chr10 90488585 90488586 q23.31 ENSG00000224750, LINC02653 Tumor-derived tumor samples and cell lines Oropharyngeal squamous cell carcinoma Whole genome sequencing, followed by bioinformatic analysis using tools like Hydra, DELLY, and SplazerS 34903527 2022 Curated
TVIS20020424 Human Papillomavirus HPV16 NC_001526.2
 5209 5210 hg19 chr11 32613352 32613353 p13 CCDC73 Tumor-derived tumor samples and cell lines Oropharyngeal squamous cell carcinoma Whole genome sequencing, followed by bioinformatic analysis using tools like Hydra, DELLY, and SplazerS 34903527 2022 Curated
TVIS20020425 Human Papillomavirus HPV16 NC_001526.2
 6428 6429 hg19 chr11 32619222 32619223 p13 CCDC73 Tumor-derived tumor samples and cell lines Oropharyngeal squamous cell carcinoma Whole genome sequencing, followed by bioinformatic analysis using tools like Hydra, DELLY, and SplazerS 34903527 2022 Curated