Details for VISDB ID: TVIS10000440

Basic Information

• VISDB ID: TVIS10000440
• Fusion Name: AAV2-TNFSF10 integration
• Validated: Yes
• Curated Way: VISDB1.0
• Method: PCR and Sanger sequencing
• Wet Assay: Yes
• Sample ID: CHC1602T
• Sample Name: CHC1602T
• Sample Type: Tumor
• Age: 71
• Gender: -

Disease Information

• Disease Name: Hepatocellular carcinoma
• Disease Abbreviation: HCC
• Cancer: Yes

Literature

• PubMed ID: 26301494
• Journal: Nature GeNetics
• Published Year: 2015

Human Genome

• Human Genome Version Description: GRCh37/hg19
• Human Genome RefSeq Accession: GCF_000001405.13
• Human Chromosome: chr3
• Cytogenetic Band: q26.31
• Human Strand: +
• Human Integration Location Type: Intronic
• Hg19 Start: 172224027
• Hg19 End: 172224026
• Hg38 Start: 172506236
• Hg38 End: 172506237
• Junction Sequence: -

Target Gene

• Target Gene: TNFSF10
• Nearby Gene: -
• Distance: -

Virus Information

• Virus Name: Adeno-associated virus type 2
• Virus Subtype Name: -
• Virus Genome Accession: AF043303.1
• TaxonomyID: 272636
• Virus Abbreviation: AAV2
• Virus Genome: Adeno-associated virus 2, complete genome
• Virus Genome Length: 4679
• Virus Breakpoint1: 4270
• Virus Breakpoint2: 4571
• Virus Gene Name: -
• Virus Region Type: -
• Integrated Virus Sequence: ACAGCAAACGCTGGAATCCCGAAATTCAGTACACTTCCAACTACAACAAGTCTGTTAATGTGGACTTTACTGTGGACACTAATGGCGTGTATTCAGAGCCTCGCCCCATTGGCACCAGATACCTGACTCGTAATCTGTAATTGCTTGTTAATCAATAAACCGTTTAATTCGTTTCAGTTGAACTTTGGTCTCTGCGTATTTCTTTCTTATCTAGTTTCCATGGCTACGTAGATAAGTAGCATGGCGGGTTAATCA
• ViMIC ID: -