| Basic Information ▶ | |
| VISDB ID | TVIS10001867 |
|---|---|
| Fusion Name | HBV-TRIM48 integration |
| Validated | No |
| Curated Way | VISDB1.0 |
| Method | High-throughput Viral Integration Detection method |
| Wet Assay | No |
| Sample ID | 78216 |
| Sample Name | 078216T |
| Sample Type | Tumor |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Hepatocellular carcinoma |
| Disease Abbreviation | HCC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 27703150 |
| Journal | NATURE COMMUNICATIONS |
| Published Year | 2016 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr11 |
| Cytogenetic Band | q11 |
| Human Strand | |
| Human Integration Location Type | Promoter |
| Hg19 Start | 55025032 |
| Hg19 End | 55025032 |
| Hg38 Start | 55257556 |
| Hg38 End | 55257556 |
| Junction Sequence | gagaaaatttttgcaatctatccatctgacaaagggctaatatccagaatctacaaagaacttaaacaaattaacaagaaagaaacaaccccatcaaaaagtgggcaaaggacatgaacagacacttctcaaaagaagacatttatgcggccaacaaacatgaaaaaaaaagctcatcatcactgttcattaaagaaatgcacattaaaaccacaatgagataccatctcatgccagttagaatggcaattatta |
| Target Gene ▶ | |
| Target Gene | - |
| Nearby Gene | TRIM48 |
| Distance | 4599 |
| Virus Information ▶ | |
| Virus Name | Hepatitis B virus |
| Virus Subtype Name | - |
| Virus Genome Accession | AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1 |
| TaxonomyID | 10407 |
| Virus Abbreviation | HBV |
| Virus Genome | - |
| Virus Genome Length | 0 |
| Virus Breakpoint1 | - |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D