Details for VISDB ID: TVIS10007773

Basic Information

• VISDB ID: TVIS10007773
• Fusion Name: HBV-chrX integration
• Validated: No
• Curated Way: VISDB1.0
• Method: Next generation sequencing
• Wet Assay: No
• Sample ID: 85227
• Sample Name: 085227L
• Sample Type: Nontumor
• Age: -
• Gender: -

Disease Information

• Disease Name: Hepatocellular carcinoma
• Disease Abbreviation: HCC
• Cancer: Yes

Literature

• PubMed ID: 30271481
• Journal: Journal of Cancer
• Published Year: 2018

Human Genome

• Human Genome Version Description: GRCh37/hg19
• Human Genome RefSeq Accession: GCF_000001405.13
• Human Chromosome: chrX
• Cytogenetic Band: p22.32
• Human Strand: +
• Human Integration Location Type: Intergenic
• Hg19 Start: 5388589
• Hg19 End: 5388589
• Hg38 Start: 5470548
• Hg38 End: 5470548
• Junction Sequence: -

Target Gene

• Target Gene: ENSG00000294104
• Nearby Gene: -
• Distance: -

Virus Information

• Virus Name: Hepatitis B virus
• Virus Subtype Name: -
• Virus Genome Accession: NC_003977
• TaxonomyID: 10407
• Virus Abbreviation: HBV
• Virus Genome: Hepatitis B virus (strain ayw) genome
• Virus Genome Length: 3182
• Virus Breakpoint1: 1080
• Virus Breakpoint2: -
• Virus Gene Name: -
• Virus Region Type: Polymerase|
• Integrated Virus Sequence: TGGAAAGTATGTCAACGAATTGTGGGTCTTTTGGGTTTTGCTGCCCCTTTTACACAATGTGGTTATCCTGCGTTGATGCCTTTGTATGCATGTATTCAAT| |CTAAGCAGGCTTTCACTTTCTCGCCAACTTACAAGGCCTTTCTGTGTAAACAATACCTGAACCTTTACCCCGTTGCCCGGCAACGGCCAGGTCTGTGCCA
• ViMIC ID: -